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# The identified row IDs are then used to subset the distance ipad online casino matrix and re-cluster it with hclust.
# exprs(eset) - log2(exprs(eset) # If eset contains absolute intensity values like MAS5 results, then they should be transformed to log2 (or loge) values for # limma.
# (4.3) Batch Analysis of Many Gene Clusters # BatchResult - GOCluster_Report(CL_dfcl_DF, method"all id_type"gene clsz10, cutoff0.001, gocatsc MF "BP "CC recordSpecGOc GO:0003674 "GO:0008150 "GO:0005575 # The function 'GOCluster_Report' performs the three GO analyses in batch mode: 'GOHyperGAll 'GOHyperGAll_Subset' # or 'GOHyperGAll_Simplify'.# # Spot type file # # # Control spot information can be added to the RGList object with the spot type file (SpotTypes.# Usage with parallel package library(parallel library(doMC registerDoMC(2) # 2 cores test - ddply(.datairis,.variablesc Species meanmean(Sepal.# The argument 'type' can be assigned the values "goSlim" or "assigned".# (2.3) Obtain AffyID-to-GeneID mappings when working with AffyIDs # AffyID2GeneID(map # When working with AffyIDs, this function creates a AffyID-to-GeneID mapping data frame using by default the tair # mappings for the Arabidopsis ATH1 chip.# Works for mas5, rma and gcrma.

# (2.2) Using gene-to-GO mappings from Bioc # # Note: users should execute either step (2.1) or (2.2 but not both!
# (3.1) Reloading required data objects from local files # loadData load(file"MF_node_affy_list load(file"BP_node_affy_list load(file"CC_node_affy_list # This step makes future sessions much faster, since it allows to skip the previous data generation steps (2.1-2.3).
# If '2' is selected, then the calculations are performed column-wise.


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